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  5. Msp_g26486

Msp_g26486


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g26486
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 OTP86,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g42381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g15319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27290 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g28656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g30099 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g33250 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g36888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69046 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene64343.t1 Aspi01Gene64343 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0519.g075227 No alias not classified & original description: CDS=1-1455 0.07 OrthoFinder output from all 47 species
Azfi_s1721.g106131 No alias not classified & original description: CDS=1-2793 0.05 OrthoFinder output from all 47 species
Cba_g29502 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G002600.1 EMB2758, Ceric.02G002600 not classified & original description: pacid=50585462... 0.06 OrthoFinder output from all 47 species
Ceric.16G072300.1 Ceric.16G072300 not classified & original description: pacid=50590183... 0.09 OrthoFinder output from all 47 species
Ceric.19G069600.1 Ceric.19G069600 not classified & original description: pacid=50575437... 0.07 OrthoFinder output from all 47 species
Ceric.29G024800.1 Ceric.29G024800 not classified & original description: pacid=50625545... 0.05 OrthoFinder output from all 47 species
Ceric.30G017300.1 Ceric.30G017300 not classified & original description: pacid=50608904... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g09594 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g12693 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.09 OrthoFinder output from all 47 species
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
LOC_Os04g38980.1 LOC_Os04g38980 Pentatricopeptide repeat-containing protein At4g39952,... 0.02 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Len_g02904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21003 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26583 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44147 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g41118 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g22790 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15871 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g16135 OTP82 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g11324 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019430 No alias not classified & original description: CDS=1-4416 0.02 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Spa_g02187 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14725 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23974 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28110 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g26871 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0042393 histone binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 767 813
IPR002885 Pentatricopeptide_repeat 968 1014
IPR002885 Pentatricopeptide_repeat 564 611
IPR002885 Pentatricopeptide_repeat 664 711
IPR002885 Pentatricopeptide_repeat 260 307
IPR002885 Pentatricopeptide_repeat 362 408
IPR002885 Pentatricopeptide_repeat 866 913
IPR032867 DYW_dom 1199 1270
IPR002885 Pentatricopeptide_repeat 334 361
IPR002885 Pentatricopeptide_repeat 942 963
IPR002885 Pentatricopeptide_repeat 468 493
IPR002885 Pentatricopeptide_repeat 1042 1065
IPR002885 Pentatricopeptide_repeat 740 760
No external refs found!