Msp_g28017


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g28017
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.02 OrthoFinder output from all 47 species
AMTR_s00095p00039180 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Adi_g003733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004502 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g005663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036845 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g039747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g051856 RARE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053729 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067033 CRR21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087178 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38666 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61086 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07418 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27603 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27898 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04252 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18707 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20359 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26859 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28684 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g39107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68104 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69562 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034645 No alias not classified & original description: CDS=1-2358 0.05 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20760 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g44509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.03 OrthoFinder output from all 47 species
Ceric.10G077700.1 Ceric.10G077700 not classified & original description: pacid=50611965... 0.06 OrthoFinder output from all 47 species
Ceric.28G037300.1 Ceric.28G037300 not classified & original description: pacid=50570602... 0.03 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.04 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.04 OrthoFinder output from all 47 species
Dcu_g05694 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08260 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21484 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21668 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g28511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015466001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
Gb_29872 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g04237 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g14105 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18970 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14968 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11803 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g12725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24911 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18532 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57517 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57727 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12889 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15155 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30641 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30840 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31296 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g44678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Smo47998 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14871 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19996 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23272 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35636 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g43664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g45955 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 411 458
IPR002885 Pentatricopeptide_repeat 208 254
IPR002885 Pentatricopeptide_repeat 106 153
IPR002885 Pentatricopeptide_repeat 309 356
IPR002885 Pentatricopeptide_repeat 513 560
IPR002885 Pentatricopeptide_repeat 80 103
IPR002885 Pentatricopeptide_repeat 590 613
IPR002885 Pentatricopeptide_repeat 618 648
IPR002885 Pentatricopeptide_repeat 284 308
No external refs found!