Msp_g28343


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g28343

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00156450 REME1,... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Adi_g010601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075582 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24418 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g37181 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09043 DOT4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06042 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g23363 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g28403 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g06196 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g11914 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35188 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g44516 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g45732 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g75345 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07093 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g28005 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g21837 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46551 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01012159001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.08 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 OrthoFinder output from all 47 species
Gb_21434 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g53877 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g53944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12221 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57366 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g28556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40202 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.05 OrthoFinder output from all 47 species
Spa_g07289 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12114 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g16630 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17173 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20291 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g21674 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g26791 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g33278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41043 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 330 360
IPR002885 Pentatricopeptide_repeat 200 222
IPR002885 Pentatricopeptide_repeat 302 327
No external refs found!