Msp_g28512


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g28512

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005655 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034865 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g035521 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036755 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097074 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07904 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g16770 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26368 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31801.t2 Aspi01Gene31801 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001409 No alias not classified & original description: CDS=1-2469 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007907 No alias not classified & original description: CDS=160-2841 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036583 No alias not classified & original description: CDS=1-1518 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038406 OTP86 not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Cba_g20760 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G016200.1 Ceric.12G016200 not classified & original description: pacid=50601153... 0.04 OrthoFinder output from all 47 species
Dac_g20899 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g28298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07619 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19078 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06009 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23831 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g20190.1 LOC_Os03g20190 Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
Len_g09168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18308 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54970 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04742 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05574 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07376 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07380 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13946 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41392 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g48606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08417 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15172 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16442 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19585 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28139 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14721 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g30350 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63359 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23584 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30640 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g28712 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Spa_g04485 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15468 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26827 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54422 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04082 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 183 230
IPR002885 Pentatricopeptide_repeat 288 317
No external refs found!