Msp_g30766

Description : component *(bL34c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0007282 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007282_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g30766

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00119000	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
AT1G29070	No alias	Ribosomal protein L34	0.1	OrthoFinder output from all 47 species
Aev_g01858	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0700.g082613	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.11G081600.1	Ceric.11G081600	component *(bL34c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre01.g030050	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
GSVIVT01021193001	No alias	Protein biosynthesis.organelle translation...	0.12	OrthoFinder output from all 47 species
Gb_28936	No alias	component psRPL34 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g59060.1	LOC_Os01g59060	component psRPL34 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Len_g11773	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Mp1g06530.1	No alias	component psRPL34 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Ore_g14577	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c18_19220V3.1	Pp3c18_19220	Ribosomal protein L34	0.04	OrthoFinder output from all 47 species
Pp3c21_6450V3.1	Pp3c21_6450	Ribosomal protein L34	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010804	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g04499	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc01g056780.3.1	Solyc01g056780	component psRPL34 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Spa_g04308	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Spa_g14614	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Zm00001e019534_P001	Zm00001e019534	component psRPL34 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000271	Ribosomal_L34	174	204

External Links

No external refs found!

Msp_g30766

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation