Msp_g34538


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g34538

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00230160 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Adi_g004274 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035618 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069231 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g13814 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15922 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33107 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40270 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31776.t1 Aspi01Gene31776 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36735.t1 Aspi01Gene36735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene60513.t1 Aspi01Gene60513 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68744.t1 Aspi01Gene68744 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29847 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G062400.1 Ceric.13G062400 not classified & original description: pacid=50636814... 0.04 OrthoFinder output from all 47 species
Ceric.29G017900.1 Ceric.29G017900 not classified & original description: pacid=50624370... 0.03 OrthoFinder output from all 47 species
Dac_g21408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07619 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16902 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os09g24640.1 REME1, LOC_Os09g24640 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
Len_g04783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g38569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45877 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20192 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47301 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25056 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g108180.4.1 Solyc01g108180 RNA editing factor (MEF8). RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.03 OrthoFinder output from all 47 species
Solyc11g040060.3.1 EMB2758, Solyc11g040060 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Spa_g02061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g02636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21372 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10298 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30551 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31914 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g35298 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44315 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 471 517
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 268 313
IPR002885 Pentatricopeptide_repeat 369 415
IPR002885 Pentatricopeptide_repeat 139 161
IPR002885 Pentatricopeptide_repeat 547 570
IPR002885 Pentatricopeptide_repeat 343 366
IPR002885 Pentatricopeptide_repeat 445 467
IPR002885 Pentatricopeptide_repeat 239 261
No external refs found!