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  5. Msp_g38598

Msp_g38598


Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g38598

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00048810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AT2G37190 No alias Ribosomal protein L11 family protein 0.04 OrthoFinder output from all 47 species
Ceric.23G070600.1 Ceric.23G070600 component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01025189001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os02g47140.1 LOC_Os02g47140 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os04g50990.1 LOC_Os04g50990 component RPL12 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Lfl_g16793 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g45524 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c15_14410V3.1 Pp3c15_14410 Ribosomal protein L11 family protein 0.02 OrthoFinder output from all 47 species
Ppi_g24794 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc11g069440.1.1 Solyc11g069440 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g04458 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g04459 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g06495 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 13 68
IPR020783 Ribosomal_L11_C 74 143
No external refs found!