Msp_g42868


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42868

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 OrthoFinder output from all 47 species
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036768 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05719 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19294 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32690 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36874 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00343.t1 Aspi01Gene00343 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene12035.t1 Aspi01Gene12035 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene12658.t1 Aspi01Gene12658 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene33738.t1 Aspi01Gene33738 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34516.t1 Aspi01Gene34516 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36455.t1 CRR21, Aspi01Gene36455 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45318.t1 Aspi01Gene45318 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65602.t1 Aspi01Gene65602 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene72317.t1 Aspi01Gene72317 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07718 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g10212 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G062800.1 Ceric.06G062800 not classified & original description: pacid=50620833... 0.02 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.22G020200.1 Ceric.22G020200 not classified & original description: pacid=50615278... 0.01 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.02 OrthoFinder output from all 47 species
Ceric.33G050800.1 CRR22, Ceric.33G050800 not classified & original description: pacid=50606654... 0.01 OrthoFinder output from all 47 species
Dac_g05769 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07737 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43746 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g44186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47892 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g17720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.01 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.01 OrthoFinder output from all 47 species
Len_g03404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24715 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g33777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06708 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g07128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g07850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32919 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g34619 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g04242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05258 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10472 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12572 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16025 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27953 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27965 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28136 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03052 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g06239 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13627 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g23618 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g01948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43481 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43670 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004070 CRR22 not classified & original description: CDS=1-2127 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004386 No alias not classified & original description: CDS=1-2367 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010124 No alias ssDNA-binding protein *(OSB) & original description: CDS=208-2547 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010465 No alias not classified & original description: CDS=1-2262 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011780 No alias not classified & original description: CDS=1-2490 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018323 No alias not classified & original description: CDS=1-1728 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0215.g026034 OTP84 not classified & original description: CDS=2081-4369 0.01 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13764 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14924 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g16146 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29223 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g30207 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g30280 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g36544 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g03388 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 540 586
IPR002885 Pentatricopeptide_repeat 641 687
IPR002885 Pentatricopeptide_repeat 741 790
IPR002885 Pentatricopeptide_repeat 236 284
IPR002885 Pentatricopeptide_repeat 944 990
IPR002885 Pentatricopeptide_repeat 843 890
IPR002885 Pentatricopeptide_repeat 439 487
IPR046848 E_motif 1061 1123
IPR002885 Pentatricopeptide_repeat 413 436
IPR002885 Pentatricopeptide_repeat 1018 1044
IPR002885 Pentatricopeptide_repeat 514 537
IPR002885 Pentatricopeptide_repeat 343 367
IPR002885 Pentatricopeptide_repeat 312 332
No external refs found!