1. Home
  2. Species
  3. Microlepia speluncae
  4. Sequence
  5. Msp_g44227

Msp_g44227 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : endoribonuclease (DCL4) of transacting siRNA pathway & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g44227

Target Alias Description ECC score Gene Family Method Actions
Adi_g022447 DCL1, CAF,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.32 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g33201 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g16399 ATDCL2, DCL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.02 OrthoFinder output from all 47 species
Mp1g02840.1 DCL1, CAF,... endoribonuclease (DCL3). endoribonuclease (DCL4) 0.04 OrthoFinder output from all 47 species
Pir_g16059 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ppi_g03288 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Sam_g11612 No alias endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Smo86110 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 24 185
IPR000999 RNase_III_dom 1222 1332
IPR000999 RNase_III_dom 1017 1146
IPR003100 PAZ_dom 843 973
IPR014720 dsRBD_dom 1357 1421
IPR001650 Helicase_C 380 487
No external refs found!