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  5. Msp_g46084

Msp_g46084


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g46084
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 OTP86,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.04 OrthoFinder output from all 47 species
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 OrthoFinder output from all 47 species
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g065393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067950 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10753 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g42334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29787.t1 Aspi01Gene29787 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025098 No alias not classified & original description: CDS=1-4389 0.04 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037545 No alias not classified & original description: CDS=1-2337 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043395 No alias not classified & original description: CDS=1-2703 0.02 OrthoFinder output from all 47 species
Azfi_s0194.g057200 No alias not classified & original description: CDS=1-3033 0.03 OrthoFinder output from all 47 species
Azfi_s1596.g104539 No alias not classified & original description: CDS=111-3779 0.05 OrthoFinder output from all 47 species
Ceric.11G015200.1 Ceric.11G015200 not classified & original description: pacid=50595684... 0.03 OrthoFinder output from all 47 species
Ceric.13G010300.1 Ceric.13G010300 not classified & original description: pacid=50636329... 0.05 OrthoFinder output from all 47 species
Ceric.30G023200.1 Ceric.30G023200 not classified & original description: pacid=50609019... 0.04 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Dcu_g08907 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26370 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
GSVIVT01038381001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Len_g44800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_89214g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61335 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008680 No alias not classified & original description: CDS=1-2187 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012739 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021127 No alias not classified & original description: CDS=28-1563 0.03 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo81625 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Solyc09g090220.3.1 Solyc09g090220 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Tin_g30123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 300 323
IPR002885 Pentatricopeptide_repeat 121 168
IPR002885 Pentatricopeptide_repeat 223 271
IPR002885 Pentatricopeptide_repeat 326 372
No external refs found!