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  5. Msp_g47217

Msp_g47217


Description : CMF transcription factor & original description: none


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g47217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT1G49130 No alias B-box type zinc finger protein with CCT domain 0.02 OrthoFinder output from all 47 species
Adi_g062463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09765 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20729 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18419.t1 Aspi01Gene18419 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.08G070500.1 Ceric.08G070500 BBX class-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G022400.1 Ceric.12G022400 CMF transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g09127 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Nbi_g24194 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18512 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14853 No alias CMF transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g19039 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c14_8140V3.1 Pp3c14_8140 B-box type zinc finger protein with CCT domain 0.01 OrthoFinder output from all 47 species
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Solyc03g119540.3.1 Solyc03g119540 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Spa_g47451 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06036 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021820_P001 Zm00001e021820 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 27 69
IPR010402 CCT_domain 541 583
No external refs found!