Ala_g02680 (ATVPS54, VPS54)

Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none

Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g02680

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00168410	ATVPS54, VPS54,...	Vacuolar protein sorting-associated protein 54,...	0.02	OrthoFinder output from all 47 species
AMTR_s00072p00168660	ATVPS54, VPS54,...	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.02	OrthoFinder output from all 47 species
AT4G19490	ATVPS54, VPS54	VPS54	0.06	OrthoFinder output from all 47 species
Adi_g063596	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Als_g05127	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Aob_g22183	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Ceric.15G033300.1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.25	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre02.g087551	ATVPS54, VPS54	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.05	OrthoFinder output from all 47 species
Dcu_g12433	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.08	OrthoFinder output from all 47 species
Dde_g11326	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
GSVIVT01037972001	ATVPS54, VPS54	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.06	OrthoFinder output from all 47 species
Gb_03763	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.06	OrthoFinder output from all 47 species
LOC_Os04g13470.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.09	OrthoFinder output from all 47 species
Len_g01396	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Lfl_g02410	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Mp5g09490.1	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.06	OrthoFinder output from all 47 species
Msp_g23962	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Ore_g15136	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Pir_g01065	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Ppi_g03262	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Sam_g10508	No alias	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Solyc02g030100.4.1	ATVPS54, VPS54,...	Vacuolar protein sorting-associated protein 54,...	0.04	OrthoFinder output from all 47 species
Solyc02g030110.2.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Zm00001e008702_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.14	OrthoFinder output from all 47 species
Zm00001e040599_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0030906	retromer, cargo-selective complex	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
MF	GO:0061666	UFM1 ligase activity	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0071568	UFM1 transferase activity	IEP	HCCA
BP	GO:0071569	protein ufmylation	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	889	1020

External Links

No external refs found!

Ala_g02680 (ATVPS54, VPS54)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation