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  5. Ala_g05447

Ala_g05447


Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g05447

Target Alias Description ECC score Gene Family Method Actions
Adi_g013124 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07993 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g29184 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011258 CCR2, ATGRP7,... not classified & original description: CDS=99-740 0.03 OrthoFinder output from all 47 species
Cba_g04821 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G002500.1 Ceric.09G002500 RNA chaperone *(RZ1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.09G066000.1 Ceric.09G066000 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Cre09.g392350 GRP2, ATGRP2, GR-RBP2 Glycine-rich RNA-binding protein 2, mitochondrial... 0.01 OrthoFinder output from all 47 species
Ehy_g00990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14516 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g47800.1 ATRZ-1A, LOC_Os03g47800 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Nbi_g23738 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26663 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g20372 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000635 GR-RBP3 RNA editing factor *(ORRM3) & original description: CDS=202-855 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009193 No alias not classified & original description: CDS=133-507 0.03 OrthoFinder output from all 47 species
Sam_g09617 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09618 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36205 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo81392 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Solyc02g088790.3.1 GR-RBP3, Solyc02g088790 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Tin_g06526 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028502_P003 Zm00001e028502 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018199 peptidyl-glutamine modification IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 149 164
IPR000504 RRM_dom 38 106
No external refs found!