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  5. Ala_g11046

Ala_g11046 (PGP2)


Aliases : PGP2

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g11046
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263610 ABCB19,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00018p00193700 ABCB14,... ABC transporter B family member 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00018p00193820 PGP1, ABCB1,... ABC transporter B family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00109790 PGP11,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00128390 PGP16,... ABC transporter B family member 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G55320 PGP20 P-glycoprotein 20 0.02 OrthoFinder output from all 47 species
AT3G62150 PGP21 P-glycoprotein 21 0.03 OrthoFinder output from all 47 species
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.03 OrthoFinder output from all 47 species
Adi_g014378 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087061 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105656 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18810 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22635 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36046 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene12320.t2 PGP2, Aspi01Gene12320 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene45620.t1 PGP11, Aspi01Gene45620 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001271 ABCB19,... subfamily ABCB transporter & original description: CDS=82-3879 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044118 PGP20 subfamily ABCB transporter & original description: CDS=2010-6257 0.03 OrthoFinder output from all 47 species
Dde_g00972 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03500 PGP6 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09158 PGP11 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47998 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12010 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017696001 PGP11 Solute transport.primary active transport.ABC... 0.05 OrthoFinder output from all 47 species
Gb_07563 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Gb_08614 PGP11 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Gb_10211 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_10216 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_32125 PGP11 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_33057 ABCB19,... subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_33058 ABCB19,... subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_36497 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g50070.1 LOC_Os01g50070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g50080.1 ATPGP4, PGP4,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Len_g05883 PGP1, ABCB1, ATPGP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10739 ABCB19,... subfamily ABCB transporter & original description: none 0.07 OrthoFinder output from all 47 species
MA_10134765g0010 PGP11 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_102299g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_10280832g0010 PGP11 ABC transporter B family member 7 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_111099g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_114017g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_6870g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_79399g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_83806g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Msp_g17749 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36979 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08816 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60074 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018197 ABCB19,... subfamily ABCB transporter & original description: CDS=226-4089 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022862 No alias not classified & original description: CDS=281-511 0.03 OrthoFinder output from all 47 species
Smo123936 ATPGP4, PGP4, ABCB4, MDR4 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo408755 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Solyc03g005860.4.1 PGP11, Solyc03g005860 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Solyc12g098840.3.1 PGP11, Solyc12g098840 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Spa_g26470 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06701 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08424 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041087_P002 Zm00001e041087 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 420 568
IPR011527 ABC1_TM_dom 722 991
IPR011527 ABC1_TM_dom 77 350
IPR003439 ABC_transporter-like_ATP-bd 1059 1207
No external refs found!