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  5. Ala_g12023

Ala_g12023 (UVR8)


Aliases : UVR8

Description : not classified & original description: none


Gene families : OG0004358 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004358_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12023

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0011.g012500 UVR8 not classified & original description: CDS=1264-2781 0.03 OrthoFinder output from all 47 species
Ceric.03G034500.1 UVR8, Ceric.03G034500 not classified & original description: pacid=50572964... 0.04 OrthoFinder output from all 47 species
Cre11.g467609 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g07716 UVR8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07108 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g10210.1 UVR8 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sam_g52508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 225 274
IPR000408 Reg_chr_condens 329 381
IPR000408 Reg_chr_condens 123 170
IPR000408 Reg_chr_condens 279 326
IPR000408 Reg_chr_condens 173 222
IPR000408 Reg_chr_condens 66 115
IPR000408 Reg_chr_condens 17 63
IPR000569 HECT_dom 779 1082
No external refs found!