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  5. Ala_g12852

Ala_g12852 (PHR1, AtPHR1)


Aliases : PHR1, AtPHR1

Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12852

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00063460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
Aev_g08301 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08342 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04353 PHL1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g32729 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g04536 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35964.t1 Aspi01Gene35964 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0401.g068282 KAN4, ATS KANADI-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g19840 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g21846 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G062400.1 Ceric.12G062400 GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.32G050900.1 Ceric.32G050900 transcription factor *(CLAUSA) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01013085001 KAN2 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os11g01480.1 LOC_Os11g01480 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species
LOC_Os12g01490.1 LOC_Os12g01490 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species
MA_8183372g0010 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g31008 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g09793 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g17637 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18043 KAN4, ATS KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13488 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g26114 PHL1 transcription factor *(PHR1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29411 PHL1 transcription factor *(PHR1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08186 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11923 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017585 No alias not classified & original description: CDS=1499-2212 0.02 OrthoFinder output from all 47 species
Sam_g15241 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc02g076670.3.1 Solyc02g076670 Putative Myb family transcription factor At1g14600... 0.03 OrthoFinder output from all 47 species
Solyc02g080740.3.1 Solyc02g080740 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Solyc07g045000.4.1 Solyc07g045000 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species
Solyc12g006280.3.1 Solyc12g006280 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species
Spa_g39146 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e004125_P001 Zm00001e004125 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e037731_P001 APL, WDY, Zm00001e037731 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e037761_P001 Zm00001e037761 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039024_P001 Zm00001e039024 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 396 441
IPR001005 SANT/Myb 311 361
No external refs found!