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  5. Ala_g13479

Ala_g13479 (DRD3, ATNRPD1B,...)


Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5

Description : component *(NRPE1) of RNA polymerase V complex & original description: none


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13479

Target Alias Description ECC score Gene Family Method Actions
Dcu_g05836 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dde_g21156 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013491001 DRD3, ATNRPD1B,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 OrthoFinder output from all 47 species
GSVIVT01019869001 NRPD1A, POL IVA,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
Gb_21425 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.03 OrthoFinder output from all 47 species
Gb_24058 NRPD1A, POL IVA,... subunit 1 of Pol IV RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os02g05880.1 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.03 OrthoFinder output from all 47 species
Len_g20487 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.05 OrthoFinder output from all 47 species
Mp3g15530.1 DRD3, ATNRPD1B,... subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.04 OrthoFinder output from all 47 species
Nbi_g22575 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g46354 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Sam_g12042 No alias component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 961 1407
IPR007080 RNA_pol_Rpb1_1 16 433
IPR007083 RNA_pol_Rpb1_4 863 941
IPR000722 RNA_pol_asu 485 644
IPR007066 RNA_pol_Rpb1_3 648 792
No external refs found!