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  5. Ala_g15630

Ala_g15630 (ARF16)


Aliases : ARF16

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g15630

Target Alias Description ECC score Gene Family Method Actions
AT1G30330 ARF6 auxin response factor 6 0.02 OrthoFinder output from all 47 species
Als_g51944 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g19294 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025159001 ARF4 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Len_g20412 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11690 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Smo438333 TIR5, MSG1,... Auxin response factor 11 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Solyc11g069500.2.1 ARF10, Solyc11g069500 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc12g006350.3.1 ARF6, Solyc12g006350 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 328 411
IPR003340 B3_DNA-bd 144 245
No external refs found!