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  5. Ala_g15641

Ala_g15641


Description : not classified & original description: none


Gene families : OG0000006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g15641
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Aev_g46683 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g50917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00115.t1 Aspi01Gene00115 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G036800.1 Ceric.17G036800 not classified & original description: pacid=50618434... 0.03 OrthoFinder output from all 47 species
Ceric.34G036500.1 Ceric.34G036500 not classified & original description: pacid=50623351... 0.02 OrthoFinder output from all 47 species
Cre17.g748047 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g31082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24417 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c11_7650V3.1 Pp3c11_7650 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c11_7700V3.1 Pp3c11_7700 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c8_14850V3.1 Pp3c8_14850 DNAse I-like superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g35113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000477 RT_dom 7 116
No external refs found!