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  5. Ala_g17277

Ala_g17277


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g17277
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27705 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g34109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36451 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36490 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.04 OrthoFinder output from all 47 species
Cba_g05254 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06571 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29653 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G065700.1 Ceric.09G065700 not classified & original description: pacid=50586915... 0.03 OrthoFinder output from all 47 species
Ceric.10G046000.1 CRR22, Ceric.10G046000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G040900.1 Ceric.11G040900 not classified & original description: pacid=50596742... 0.04 OrthoFinder output from all 47 species
Ceric.13G039400.1 Ceric.13G039400 not classified & original description: pacid=50635903... 0.04 OrthoFinder output from all 47 species
Ceric.23G048800.1 Ceric.23G048800 not classified & original description: pacid=50611258... 0.03 OrthoFinder output from all 47 species
Ceric.27G018200.1 Ceric.27G018200 not classified & original description: pacid=50604999... 0.03 OrthoFinder output from all 47 species
Dac_g15344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26858 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Gb_21443 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
Len_g01885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30026 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_4438g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_94165g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23175 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20604 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29922 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39681 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31236 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013695 No alias not classified & original description: CDS=1-2949 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g013850.1.1 CRR21, Solyc08g013850 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Spa_g03178 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14608 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23700 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03535 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14871 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17143 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17460 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26890 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26898 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 487 509
IPR002885 Pentatricopeptide_repeat 312 342
IPR002885 Pentatricopeptide_repeat 108 134
IPR002885 Pentatricopeptide_repeat 207 256
IPR002885 Pentatricopeptide_repeat 514 559
IPR002885 Pentatricopeptide_repeat 411 459
IPR002885 Pentatricopeptide_repeat 717 763
IPR002885 Pentatricopeptide_repeat 615 661
No external refs found!