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  5. Ala_g19733

Ala_g19733 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g19733
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00138540 LOP1, TRN1,... Protein TORNADO 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ala_g35639 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14110 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52462 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18237 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26356 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58555 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene26671.t1 LOP1, TRN1,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G016100.1 LOP1, TRN1,... not classified & original description: pacid=50621243... 0.04 OrthoFinder output from all 47 species
Ceric.18G016400.1 Ceric.18G016400 not classified & original description: pacid=50620952... 0.04 OrthoFinder output from all 47 species
Ceric.20G043500.1 LOP1, TRN1,... not classified & original description: pacid=50566189... 0.03 OrthoFinder output from all 47 species
Dac_g22269 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36701 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g36702 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g44769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28705 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31160 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_41768 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g40178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_94605g0020 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g14064 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38222 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19569 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g33385 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g42087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38868 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g45781 LOP1, TRN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 595 732
No external refs found!