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  5. Ala_g20034

Ala_g20034


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g20034
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g017104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g094457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g097221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07157 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19052 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07982 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17445 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18367 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g60598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14256.t1 Aspi01Gene14256 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene34954.t1 Aspi01Gene34954 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43499.t1 REME1, Aspi01Gene43499 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47938.t1 CRR22, Aspi01Gene47938 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000793 No alias not classified & original description: CDS=1-2415 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036581 No alias not classified & original description: CDS=1-1653 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.03 OrthoFinder output from all 47 species
Azfi_s2932.g113765 CRR22 not classified & original description: CDS=1-1710 0.05 OrthoFinder output from all 47 species
Cba_g20863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G041400.1 Ceric.01G041400 not classified & original description: pacid=50592429... 0.03 OrthoFinder output from all 47 species
Ceric.06G003600.1 Ceric.06G003600 not classified & original description: pacid=50620322... 0.03 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G078400.1 Ceric.11G078400 not classified & original description: pacid=50596841... 0.04 OrthoFinder output from all 47 species
Ceric.11G093500.1 VAC1, ECB2,... not classified & original description: pacid=50595637... 0.03 OrthoFinder output from all 47 species
Ceric.13G010800.1 Ceric.13G010800 not classified & original description: pacid=50634967... 0.04 OrthoFinder output from all 47 species
Ceric.25G047500.1 Ceric.25G047500 not classified & original description: pacid=50594463... 0.03 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Ceric.30G029200.1 Ceric.30G029200 not classified & original description: pacid=50608909... 0.04 OrthoFinder output from all 47 species
Ceric.32G042700.1 Ceric.32G042700 not classified & original description: pacid=50598057... 0.05 OrthoFinder output from all 47 species
Ceric.34G070200.1 Ceric.34G070200 not classified & original description: pacid=50624170... 0.04 OrthoFinder output from all 47 species
Dac_g34941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08310 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16805 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46812 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47933 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48258 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50253 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07052 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07891 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01003453001 OTP80 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.02 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
GSVIVT01028697001 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50280.1 CRR22, LOC_Os02g50280 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g01850.1 LOC_Os12g01850 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g01885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24197 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27027 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06666 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07422 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11306 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15222 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17485 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_38395g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_863836g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_9354530g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g02751 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16041 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20199 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13340 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56808 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006564 No alias not classified & original description: CDS=1-1977 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008527 OTP84 borate transporter *(BOR) & original description: CDS=118-8541 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.03 OrthoFinder output from all 47 species
Sam_g01598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc08g013850.1.1 CRR21, Solyc08g013850 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
Solyc09g010070.1.1 EMB2758, Solyc09g010070 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19054 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25939 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45696 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17781 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007600_P001 Zm00001e007600 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 125 170
IPR002885 Pentatricopeptide_repeat 200 222
IPR002885 Pentatricopeptide_repeat 98 120
No external refs found!