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  5. Ala_g24726

Ala_g24726


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g24726
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aob_g40645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67675 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g20308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18580 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41100 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g16042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g16805 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27962 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g04779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g01747 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g081020.1.1 Solyc01g081020 RNA editing factor (OTP80) 0.06 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 535 559
IPR002885 Pentatricopeptide_repeat 96 122
IPR002885 Pentatricopeptide_repeat 156 202
IPR002885 Pentatricopeptide_repeat 358 406
IPR002885 Pentatricopeptide_repeat 460 507
IPR002885 Pentatricopeptide_repeat 256 304
No external refs found!