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  5. Ala_g25268

Ala_g25268 (HAF01, HAC13, TAF1, HAF1, GTD1)


Aliases : HAF01, HAC13, TAF1, HAF1, GTD1

Description : component *(HAF/TAF1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0003088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g25268
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.06 OrthoFinder output from all 47 species
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.11 OrthoFinder output from all 47 species
Adi_g086241 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
Aev_g16440 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Als_g23531 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Als_g30416 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aop_g13570 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aspi01Gene49967.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aspi01Gene49969.t1 TAF1B, TAF1,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aspi01Gene49971.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aspi01Gene63823.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011150 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Cba_g11487 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ceric.20G008000.1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.20 HAF01, HAC13,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Cre10.g425501 HAF01, HAC13,... Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.05 OrthoFinder output from all 47 species
Dac_g06992 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Dcu_g03217 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
GSVIVT01020528001 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.07 OrthoFinder output from all 47 species
LOC_Os06g43790.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Lfl_g06767 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Mp5g22790.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Msp_g14379 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
Ore_g04821 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ppi_g32049 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Sam_g37859 No alias component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Smo409957 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.08 OrthoFinder output from all 47 species
Solyc07g006820.4.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Spa_g55054 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Tin_g11474 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e037464_P001 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 10 54
IPR022591 TAF1_HAT_dom 580 1152
IPR001487 Bromodomain 1812 1888
IPR000626 Ubiquitin-like_dom 666 736
No external refs found!