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  5. Ala_g33031

Ala_g33031


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g33031
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Adi_g000420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g014923 CIP111 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04868 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18495 CIP111 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
GSVIVT01010343001 emb1354, CDC48C Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Len_g32887 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39791 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431342g0010 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g06020 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
Solyc10g078320.2.1 CIP111, Solyc10g078320 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g39328 No alias platform ATPase CDC48 & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 136 198
IPR003959 ATPase_AAA_core 522 589
IPR003959 ATPase_AAA_core 249 378
IPR003338 CDC4_N-term_subdom 34 115
IPR041569 AAA_lid_3 401 443
No external refs found!