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  5. Ala_g34269

Ala_g34269


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g34269

Target Alias Description ECC score Gene Family Method Actions
Adi_g098989 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g20047 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29136 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g13562 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16831 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20609 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g21679 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25829 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g28513 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g33357 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dcu_g21452 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g04434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031849001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.03 OrthoFinder output from all 47 species
Len_g18801 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28102 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41397 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g04976 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g03644 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08807 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09990 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15027 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22972 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35928 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1878 0.02 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.04 OrthoFinder output from all 47 species
Spa_g10389 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 712 771
IPR002885 Pentatricopeptide_repeat 158 180
IPR002885 Pentatricopeptide_repeat 387 417
IPR002885 Pentatricopeptide_repeat 589 619
IPR002885 Pentatricopeptide_repeat 561 583
IPR002885 Pentatricopeptide_repeat 661 684
IPR002885 Pentatricopeptide_repeat 359 380
IPR002885 Pentatricopeptide_repeat 184 231
IPR002885 Pentatricopeptide_repeat 284 330
IPR002885 Pentatricopeptide_repeat 485 531
IPR046848 E_motif 805 863
No external refs found!