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  5. Ala_g38414

Ala_g38414 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g38414
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00227790 NFD2, HMG BETA... HMG1/2-like protein OS=Vicia faba 0.02 OrthoFinder output from all 47 species
AT1G20693 NFD2, HMG BETA... high mobility group B2 0.05 OrthoFinder output from all 47 species
Aev_g32469 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Cre16.g672300 No alias No description available 0.02 OrthoFinder output from all 47 species
Lfl_g21739 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g29052 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
MA_72555g0010 NFD2, HMG BETA... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g06141 No alias DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Solyc02g082700.3.1 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.02 OrthoFinder output from all 47 species
Spa_g16628 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 124 192
No external refs found!