Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00033p00240190 | evm_27.TU.AmTr_v1... | Cell cycle.organelle machineries.DNA... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00053p00090700 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g13880... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00172690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g37170... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00092p00064890 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g003839 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g018966 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g019220 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g033814 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g059237 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g099198 | MEF19 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g02126 | OSB1 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g18129 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17018 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g21679 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g22769 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g36188 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g36503 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16270 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g19869 | LPA66 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26635 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g26694 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26698 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30828 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30904 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g58106 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g41640 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09162 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000446 | No alias | not classified & original description: CDS=1-2970 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000662 | No alias | not classified & original description: CDS=1-2844 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011663 | No alias | not classified & original description: CDS=1-3036 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0034.g025187 | OTP84 | not classified & original description: CDS=1-2199 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025724 | No alias | not classified & original description: CDS=1-3840 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0038.g026358 | No alias | not classified & original description: CDS=1-3174 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0127.g048709 | VAC1, ECB2, ATECB2 | not classified & original description: CDS=1-2400 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0210.g058082 | No alias | not classified & original description: CDS=1-2637 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0220.g058688 | No alias | not classified & original description: CDS=170-3529 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0233.g059353 | No alias | not classified & original description: CDS=91-3312 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0282.g063034 | No alias | not classified & original description: CDS=389-4795 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06580 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07175 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g07719 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75118 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.18G069700.1 | CRR2, Ceric.18G069700 | not classified & original description: pacid=50622363... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021035.24 | No alias | Pentatricopeptide repeat-containing protein At1g63080,... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g09764 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g12916 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30267 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g30474 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07093 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g17291 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g21447 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g43258 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g09819 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g10497 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g46783 | REME1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g15613 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g16748 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010031001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01031849001 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01036975001 | EMB2758 | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_12832 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g08120.1 | OTP81, LOC_Os01g08120 | RNA editing factor (OTP81) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g41650.1 | LOC_Os01g41650 | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g07050.1 | LOC_Os02g07050 | Pentatricopeptide repeat-containing protein At4g20770... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g35650.1 | LOC_Os04g35650 | Pentatricopeptide repeat-containing protein At3g26540... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g41120.1 | LOC_Os04g41120 | Pentatricopeptide repeat-containing protein At4g38010... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g34720.1 | LOI1, MEF11,... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g05435 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g11257 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g13937 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g25855 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g31186 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g36343 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g44424 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_187514g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_42343g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g38728 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g27966 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g32143 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57980 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g12890 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03245 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g05062 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g06744 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g31446 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53029 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g56244 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g56997 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0001.g000505 | CRR2 | not classified & original description: CDS=1-1110 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g04996 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06265 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12066 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16146 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g24796 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29373 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g33428 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g34646 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51690 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g065250.1.1 | EMB2744, Solyc11g065250 | Pentatricopeptide repeat-containing protein At5g39680... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g15123 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g56457 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g08260 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e029119_P001 | Zm00001e029119 | Pentatricopeptide repeat-containing protein At2g33760... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000966 | RNA 5'-end processing | IEP | HCCA |
| BP | GO:0001682 | tRNA 5'-leader removal | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| CC | GO:0030677 | ribonuclease P complex | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0099116 | tRNA 5'-end processing | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1902555 | endoribonuclease complex | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:1905348 | endonuclease complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR046848 | E_motif | 597 | 653 |
| IPR002885 | Pentatricopeptide_repeat | 252 | 274 |
| IPR002885 | Pentatricopeptide_repeat | 381 | 409 |
| IPR002885 | Pentatricopeptide_repeat | 280 | 306 |
| IPR002885 | Pentatricopeptide_repeat | 353 | 375 |
| IPR002885 | Pentatricopeptide_repeat | 178 | 207 |
| IPR002885 | Pentatricopeptide_repeat | 480 | 527 |
| No external refs found! |
