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  5. Aop_g00818

Aop_g00818 (NRPD1A, POL IVA,...)


Aliases : NRPD1A, POL IVA, NRPD1, SMD2, SDE4

Description : component *(NRPE1) of RNA polymerase V complex & original description: none


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g00818

Target Alias Description ECC score Gene Family Method Actions
Pir_g06880 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Spa_g21387 NRPD1A, POL IVA,... not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 16 245
IPR007083 RNA_pol_Rpb1_4 726 786
IPR000722 RNA_pol_asu 344 498
IPR007081 RNA_pol_Rpb1_5 837 1231
IPR007066 RNA_pol_Rpb1_3 503 651
No external refs found!