Aliases : CDC48B
Description : platform ATPase CDC48 & original description: none
Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00049p00071550 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00085p00052820 | CDC48A, CDC48,... | Cell division cycle protein 48 homolog OS=Glycine max | 0.03 | OrthoFinder output from all 47 species | |
| AT3G01610 | emb1354, CDC48C | cell division cycle 48C | 0.03 | OrthoFinder output from all 47 species | |
| AT3G53230 | No alias | ATPase, AAA-type, CDC48 protein | 0.02 | OrthoFinder output from all 47 species | |
| AT3G56690 | CIP111 | Cam interacting protein 111 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g114666 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g09138 | CIP111 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g20264 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g33031 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0178.g056166 | No alias | platform ATPase CDC48 & original description: CDS=301-2751 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0210.g058064 | No alias | platform ATPase CDC48 & original description: CDS=1-2484 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g15787 | CDC48B | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.16G049300.1 | CDC48B, Ceric.16G049300 | platform ATPase CDC48 & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000525.10 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g398550 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g401182 | CIP111 | Calmodulin-interacting protein 111 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08248 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g10601 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g07885 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09095 | CDC48B | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09970 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007689001 | No alias | Cell division cycle protein 48 homolog OS=Glycine max | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010343001 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g01980.1 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os11g11340.1 | CIP111, LOC_Os11g11340 | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| MA_26837g0010 | CIP111 | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g12350.1 | emb1354, CDC48C | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g13350.1 | CIP111 | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g20500.1 | CDC48B | Cell division control protein 48 homolog B... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31553 | CDC48B | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g44449 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g40907 | CDC48B | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g13016 | CIP111 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0117.g021123 | CIP111 | not classified & original description: CDS=115-3081 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g068330.4.1 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g012190.3.1 | CDC48B, Solyc05g012190 | Cell division control protein 48 homolog B... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g11219 | CDC48B | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g19659 | CIP111 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e021405_P001 | CIP111, Zm00001e021405 | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036688_P001 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| MF | GO:0016887 | ATP hydrolysis activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| No external refs found! |
