Aop_g06116 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g06116
Cluster	HCCA: Cluster_311

Target	Alias	Description	ECC score	Gene Family Method
AT1G08315	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G23030	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G71020	No alias	ARM repeat superfamily protein	0.05	OrthoFinder output from all 47 species
Ceric.34G048100.1	Ceric.34G048100	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Ehy_g02800	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g07686	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016119	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1314-3077	0.02	OrthoFinder output from all 47 species
Zm00001e003398_P001	PUB15, Zm00001e003398	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e031915_P001	Zm00001e031915	U-box domain-containing protein 16 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	506	544
IPR000225	Armadillo	423	462
IPR003613	Ubox_domain	308	378

External Links

No external refs found!