1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g06264

Aop_g06264 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06264

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 ATDCL3, DCL3,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.06 OrthoFinder output from all 47 species
Adi_g017408 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
Aev_g13800 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g13307 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053526 DCL1, CAF,... not classified & original description: CDS=655-2703 0.03 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.08 OrthoFinder output from all 47 species
Ceric.1Z277300.1 DCL1, CAF,... not classified & original description: pacid=50600427... 0.03 OrthoFinder output from all 47 species
Ceric.22G041000.1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.01 OrthoFinder output from all 47 species
Cre07.g345900 DCL1, CAF,... No description available 0.03 OrthoFinder output from all 47 species
Dcu_g13692 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.05 OrthoFinder output from all 47 species
GSVIVT01035494001 ATDCL3, DCL3 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 OrthoFinder output from all 47 species
Gb_34256 DCL4, ATDCL4 endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species
Gb_34257 DCL4, ATDCL4 Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.02 OrthoFinder output from all 47 species
LOC_Os03g02970.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43050.1 DCL4, ATDCL4,... endoribonuclease (DCL4) 0.03 OrthoFinder output from all 47 species
Len_g46652 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_10437243g0010 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.06 OrthoFinder output from all 47 species
MA_10437243g0020 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Mp7g11720.1 DCL4, ATDCL4 endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 OrthoFinder output from all 47 species
Mp7g12090.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.06 OrthoFinder output from all 47 species
Nbi_g07904 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.07 OrthoFinder output from all 47 species
Nbi_g25122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16091 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Pp3c2_15900V3.1 DCL1, CAF,... dicer-like 1 0.03 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species
Solyc08g067200.2.1 ATDCL3, DCL3,... Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.04 OrthoFinder output from all 47 species
Solyc10g004000.1.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Spa_g28946 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25551 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.05 OrthoFinder output from all 47 species
Zm00001e000158_P001 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
Zm00001e041209_P001 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 597 714
IPR000999 RNase_III_dom 1555 1668
IPR000999 RNase_III_dom 1324 1479
IPR003100 PAZ_dom 1157 1287
IPR006935 Helicase/UvrB_N 191 361
No external refs found!