Aop_g07899 (RPT5A, ATS6A.2)

Aliases : RPT5A, ATS6A.2

Description : regulatory component *(RPT5) of 26S proteasome & original description: none

Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g07899

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001187.20	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Oryza...	0.01	OrthoFinder output from all 47 species
Cre10.g439150	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.01	OrthoFinder output from all 47 species
Dcu_g01308	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Gb_01340	RPT5A, ATS6A.2	regulatory component RPT5 of 26S proteasome	0.02	OrthoFinder output from all 47 species
LOC_Os02g56000.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species
LOC_Os06g07630.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Nbi_g10547	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Spa_g12836	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Tin_g01827	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Zm00001e031055_P001	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019905	syntaxin binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0035145	exon-exon junction complex	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043484	regulation of RNA splicing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0050684	regulation of mRNA processing	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0080009	mRNA methylation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	364	408
IPR003959	ATPase_AAA_core	209	341
IPR032501	Prot_ATP_ID_OB_C	75	151

External Links

No external refs found!

Aop_g07899 (RPT5A, ATS6A.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation