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  5. Aop_g08144

Aop_g08144


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08144
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
AT3G11130 No alias Clathrin, heavy chain 0.06 OrthoFinder output from all 47 species
Aev_g20290 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27950 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.06 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
MA_528g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_641648g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_8471497g0010 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16662 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c2_3220V3.1 Pp3c2_3220 Clathrin, heavy chain 0.02 OrthoFinder output from all 47 species
Sam_g11622 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.06 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.06 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
IPR000547 Clathrin_H-chain/VPS_repeat 1144 1281
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
No external refs found!