1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g08667

Aop_g08667


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08667

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00067000 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013740 No alias not classified & original description: CDS=1-1461 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.03 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.04 OrthoFinder output from all 47 species
Ceric.14G063200.1 Ceric.14G063200 not classified & original description: pacid=50633319... 0.03 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.04 OrthoFinder output from all 47 species
Ceric.36G044000.1 Ceric.36G044000 not classified & original description: pacid=50569069... 0.03 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g31601 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_04294 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g12850.1 LOC_Os02g12850 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_36839g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g20052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g31234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022149 No alias not classified & original description: CDS=278-1477 0.02 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g18557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 310 368
IPR000504 RRM_dom 220 287
No external refs found!