Aop_g08752 (ARF16)

Aliases : ARF16

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g08752

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	ARF4,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AT1G59750	ARF1	auxin response factor 1	0.03	OrthoFinder output from all 47 species
ATMG00940	ORF164	DNA binding	0.05	OrthoFinder output from all 47 species
Adi_g058500	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g068596	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06926	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g27461	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08602	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g20778	ARF14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22354	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_23186	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Pnu_g25925	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261	TIR5, MSG1,...	not classified & original description: CDS=484-2670	0.03	OrthoFinder output from all 47 species
Sam_g04406	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g28812	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g39105	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g40110	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49898	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Zm00001e013639_P001	ARF19, IAA22,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e030290_P005	ARF16, Zm00001e030290	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	125	226
IPR010525	ARF_dom	306	389

External Links

No external refs found!

Aop_g08752 (ARF16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation