Aliases : ATVPS54, VPS54
Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none
Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g063596 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01396 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g10508 | No alias | GARP-specific component *(VPS54) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g030100.4.1 | ATVPS54, VPS54,... | Vacuolar protein sorting-associated protein 54,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g030110.2.1 | ATVPS54, VPS54,... | GARP-specific component VPS54 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e040599_P001 | ATVPS54, VPS54,... | GARP-specific component VPS54 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0042147 | retrograde transport, endosome to Golgi | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0009056 | catabolic process | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR012501 | Vps54_C | 881 | 1012 |
| No external refs found! |
