Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00113490 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00100p00050800 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G01100 | No alias | 60S acidic ribosomal protein family | 0.1 | OrthoFinder output from all 47 species | |
| AT4G00810 | No alias | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
| AT5G47700 | No alias | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g041465 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g041466 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g068300 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g107171 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g09775 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g32202 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g38055 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g13340 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g25252 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g71102 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000668 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Azfi_s0068.g036426 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Cba_g28590 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G125200.1 | Ceric.01G125200 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.21G004600.1 | Ceric.21G004600 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Cre17.g738300 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Dac_g08982 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g30739 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g11086 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g11087 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.11 | OrthoFinder output from all 47 species | |
| Dcu_g23416 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g06728 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01019679001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01027436001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01038637001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_21696 | No alias | component RPP1 of LSU proteome component | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os08g02340.1 | LOC_Os08g02340 | component RPP1 of LSU proteome component | 0.13 | OrthoFinder output from all 47 species | |
| Len_g01989 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g26215 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430200g0010 | No alias | component RPP1 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
| MA_90134g0010 | No alias | component RPP1 of LSU proteome component | 0.12 | OrthoFinder output from all 47 species | |
| Mp3g02890.1 | No alias | component RPP1 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Mp6g11950.1 | No alias | component RPP1 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g29772 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g19945 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g04407 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g48884 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c1_36220V3.1 | Pp3c1_36220 | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c20_2800V3.1 | Pp3c20_2800 | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c23_18100V3.1 | Pp3c23_18100 | 60S acidic ribosomal protein family | 0.1 | OrthoFinder output from all 47 species | |
| Pp3c8_22380V3.1 | Pp3c8_22380 | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
| Ppi_g07968 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g44660 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g61384 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007086 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g03056 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g10738 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g20755 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g41052 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g44435 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g44445 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g45900 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g47755 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Smo133023 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc01g006160.3.1 | Solyc01g006160 | component RPP1 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g016470.3.1 | Solyc01g016470 | component RPP1 of LSU proteome component | 0.08 | OrthoFinder output from all 47 species | |
| Solyc01g104370.4.1 | Solyc01g104370 | component RPP1 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g03569 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.13 | OrthoFinder output from all 47 species | |
| Spa_g07269 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g30536 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g45204 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g00286 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g02285 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g37350 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e021844_P001 | Zm00001e021844 | component RPP1 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e029197_P001 | Zm00001e029197 | component RPP1 of LSU proteome component | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008047 | enzyme activator activity | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044093 | positive regulation of molecular function | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0050790 | regulation of catalytic activity | IEP | HCCA |
| BP | GO:0065009 | regulation of molecular function | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0110154 | RNA decapping | IEP | HCCA |
| BP | GO:0110156 | methylguanosine-cap decapping | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
