Aliases : AtLa1, La1
Description : nascent RNA chaperone *(LA) & original description: none
Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g11426 | |
| Cluster | HCCA: Cluster_283 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00109p00056900 | AtLa1, La1,... | La protein 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AT4G32720 | AtLa1, La1 | La protein 1 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g012248 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g11405 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g11552 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g18723 | AtLa1, La1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.26G010200.1 | AtLa1, La1,... | nascent RNA chaperone *(LA) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g07377 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01035666001 | AtLa1, La1 | La protein 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01035689001 | AtLa1, La1 | La protein 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os04g42010.1 | AtLa1, La1,... | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.02 | OrthoFinder output from all 47 species | |
| MA_10212607g0010 | AtLa1, La1 | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.02 | OrthoFinder output from all 47 species | |
| MA_697179g0010 | AtLa1, La1 | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.02 | OrthoFinder output from all 47 species | |
| MA_78251g0010 | AtLa1, La1 | La protein 1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g04820.1 | AtLa1, La1 | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g01017 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g00573 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g10339 | No alias | nascent RNA chaperone *(LA) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g10340 | No alias | nascent RNA chaperone *(LA) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Solyc08g068310.3.1 | AtLa1, La1,... | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g09674 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g31164 | AtLa1, La1 | nascent RNA chaperone *(LA) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e015074_P001 | AtLa1, La1,... | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e041151_P001 | AtLa1, La1,... | RNA chaperone (LA). rRNA chaperone (IRP2) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| CC | GO:0000775 | chromosome, centromeric region | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0007059 | chromosome segregation | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0022414 | reproductive process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0045132 | meiotic chromosome segregation | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0098687 | chromosomal region | IEP | HCCA |
| BP | GO:0098813 | nuclear chromosome segregation | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1903046 | meiotic cell cycle process | IEP | HCCA |
| No external refs found! |
