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  5. Aop_g12485

Aop_g12485


Description : not classified & original description: none


Gene families : OG0001442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001442_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12485

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00215910 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.03 OrthoFinder output from all 47 species
AT1G45688 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 OrthoFinder output from all 47 species
AT3G08490 No alias BEST Arabidopsis thaliana protein match is: Late... 0.03 OrthoFinder output from all 47 species
AT3G24605 No alias No description available 0.04 OrthoFinder output from all 47 species
Adi_g103178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g59912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22107.t1 Aspi01Gene22107 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G076700.1 Ceric.01G076700 not classified & original description: pacid=50591443... 0.03 OrthoFinder output from all 47 species
Dcu_g25242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032090001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_00802 No alias microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species
Gb_09110 No alias microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species
Gb_38619 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g12820.1 LOC_Os01g12820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g44740.1 LOC_Os02g44740 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g59330.1 LOC_Os04g59330 microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species
Nbi_g05235 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_7260V3.1 Pp3c16_7260 Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.01 OrthoFinder output from all 47 species
Ppi_g62547 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018396 No alias not classified & original description: CDS=285-692 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020916 No alias not classified & original description: CDS=279-1298 0.03 OrthoFinder output from all 47 species
Sam_g08763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo75450 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc01g087140.4.1 Solyc01g087140 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc03g120710.2.1 Solyc03g120710 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g042880.3.1 Solyc11g042880 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g07963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007480_P002 Zm00001e007480 microtubule-interacting component CC of cellulose... 0.02 OrthoFinder output from all 47 species
Zm00001e015379_P001 Zm00001e015379 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e040882_P001 Zm00001e040882 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004864 LEA_2 206 301
No external refs found!