Description : component *(U1C) of U1 snRNP complex & original description: none
Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g12591 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00057p00133180 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g29133 | No alias | component *(U1C) of U1 snRNP complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g21443 | No alias | component *(U1C) of U1 snRNP complex & original description: none | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| CC | GO:0070939 | Dsl1/NZR complex | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |
