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  5. Aop_g12632

Aop_g12632 (ARF16)


Aliases : ARF16

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12632

Target Alias Description ECC score Gene Family Method Actions
Adi_g098002 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02130 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11834 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056651 ARF6 ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Cba_g15068 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37448 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75332 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G078200.1 ARF6, Ceric.10G078200 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g27461 ARF6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46643 HSS, ARF1-BP, ARF2, ORE14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_02925 ARF19, IAA22, ARF11 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
LOC_Os06g46410.1 ARF6, LOC_Os06g46410 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Lfl_g07818 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29546 ARF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13395 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15857 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-3375 0.03 OrthoFinder output from all 47 species
Smo117217 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Spa_g12615 ARF16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29541 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47786 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 285 368
IPR003340 B3_DNA-bd 123 224
No external refs found!