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  5. Aop_g12901

Aop_g12901


Description : component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im) complex & original description: none


Gene families : OG0002089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12901

Target Alias Description ECC score Gene Family Method Actions
AT5G55670 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Aev_g34624 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Ala_g02360 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Als_g14331 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Aob_g17567 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Cba_g77752 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.05 OrthoFinder output from all 47 species
Ceric.18G063400.1 Ceric.18G063400 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Dcu_g05780 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Dcu_g10783 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Ehy_g22295 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Len_g16493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03230 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Nbi_g03128 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.05 OrthoFinder output from all 47 species
Spa_g28202 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Spa_g48266 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 303 371
No external refs found!