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  5. Aop_g12905

Aop_g12905 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12905
Cluster HCCA: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00215020 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00155p00082980 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT1G59750 ARF1 auxin response factor 1 0.03 OrthoFinder output from all 47 species
AT2G28350 ARF10 auxin response factor 10 0.02 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08441 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32717 ARF8, ATARF8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33060 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33091 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g57848 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.02 OrthoFinder output from all 47 species
Cba_g19294 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33073 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g19338 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004942001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Gb_23186 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_32864 ARF6 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39786 ARF16 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os06g46410.1 ARF6, LOC_Os06g46410 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g14660 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431695g0010 ARF19, IAA22, ARF11 Auxin response factor 19 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10432580g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_122218g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
MA_85955g0020 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g15857 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06380 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g26009 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 294 376
IPR033389 AUX/IAA_dom 754 789
IPR003340 B3_DNA-bd 169 270
No external refs found!