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  5. Aop_g13395

Aop_g13395


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13395
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g022660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33357 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008760 No alias not classified & original description: CDS=1-2934 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024956 No alias not classified & original description: CDS=109-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054263 No alias not classified & original description: CDS=137-2560 0.02 OrthoFinder output from all 47 species
Cba_g03394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76301 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G115200.1 Ceric.01G115200 not classified & original description: pacid=50591005... 0.03 OrthoFinder output from all 47 species
Ceric.07G030200.1 Ceric.07G030200 not classified & original description: pacid=50627452... 0.04 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.04 OrthoFinder output from all 47 species
Ceric.13G015700.1 Ceric.13G015700 not classified & original description: pacid=50636078... 0.03 OrthoFinder output from all 47 species
Ceric.20G079900.1 CRR22, Ceric.20G079900 not classified & original description: pacid=50567064... 0.04 OrthoFinder output from all 47 species
Ceric.28G027200.1 DOT4, Ceric.28G027200 not classified & original description: pacid=50570918... 0.04 OrthoFinder output from all 47 species
Dcu_g08293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43123 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04367 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06328 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06820 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13749 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15298 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g41062 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g36349 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11574 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30640 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001529 SLO1 not classified & original description: CDS=1-1572 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004530 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2559 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009730 No alias not classified & original description: CDS=1-2454 0.03 OrthoFinder output from all 47 species
Sam_g07617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g045510.4.1 Solyc07g045510 RNA editing factor (MEF7) 0.05 OrthoFinder output from all 47 species
Solyc09g007040.1.1 Solyc09g007040 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Spa_g24048 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04120 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23244 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g28457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008193 tRNA guanylyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 210 256
IPR002885 Pentatricopeptide_repeat 310 358
IPR002885 Pentatricopeptide_repeat 115 143
IPR002885 Pentatricopeptide_repeat 184 209
No external refs found!