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  5. Aop_g13658

Aop_g13658


Description : not classified & original description: none


Gene families : OG0000995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000995_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13658

Target Alias Description ECC score Gene Family Method Actions
AT5G61190 No alias putative endonuclease or glycosyl hydrolase with... 0.04 OrthoFinder output from all 47 species
Aev_g08983 EDA32 endoribonuclease *(MNU) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06423 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04492 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g13308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04911 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_11975 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g06680.2 LOC_Os11g06680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g06703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_24887g0010 EDA32 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g13618 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g101140.4.1 Solyc01g101140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g005440.2.1 Solyc11g005440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g12543 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13705 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e024659_P001 Zm00001e024659 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_MARF1 10 147
IPR025605 OST-HTH/LOTUS_dom 642 699
IPR025605 OST-HTH/LOTUS_dom 743 805
No external refs found!