Description : histone demethylase *(KDM5) & original description: none
Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g13779 | |
| Cluster | HCCA: Cluster_303 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G38950 | No alias | Transcription factor jumonji (jmj) family protein / zinc... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene38469.t1 | PKDM7D, Aspi01Gene38469 | histone demethylase *(PKDM7) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G000100.1 | PKDM7D, Ceric.09G000100 | histone demethylase *(PKDM7) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g10770.1 | PKDM7D, LOC_Os05g10770 | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g12700 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016829 | lyase activity | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| MF | GO:0070569 | uridylyltransferase activity | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004198 | Znf_C5HC2 | 629 | 681 |
| IPR013637 | Lys_sp_deMease-like_dom | 1551 | 1726 |
| IPR013637 | Lys_sp_deMease-like_dom | 965 | 1208 |
| IPR013637 | Lys_sp_deMease-like_dom | 1113 | 1431 |
| IPR003347 | JmjC_dom | 419 | 535 |
| IPR019787 | Znf_PHD-finger | 1740 | 1800 |
| IPR019787 | Znf_PHD-finger | 247 | 293 |
| IPR003349 | JmjN | 31 | 64 |
| IPR001606 | ARID_dom | 101 | 189 |
| No external refs found! |
