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  5. Aop_g13834

Aop_g13834


Description : E3 ubiquitin ligase *(AIRP1) & original description: none


Gene families : OG0000892 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000892_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13834

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00263580 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G27660 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 OrthoFinder output from all 47 species
AT2G42060 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 OrthoFinder output from all 47 species
AT2G44370 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 OrthoFinder output from all 47 species
Aop_g05118 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene14055.t1 Aspi01Gene14055 E3 ubiquitin ligase *(AIRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.18G064000.1 Ceric.18G064000 E3 ubiquitin ligase *(AIRP1) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g16536 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36226 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g42040.1 LOC_Os07g42040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g31980.1 LOC_Os09g31980 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g01055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004401 No alias not classified & original description: CDS=1-1194 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015605 No alias not classified & original description: CDS=1-1329 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021903 No alias not classified & original description: CDS=1921-2982 0.04 OrthoFinder output from all 47 species
Solyc01g073890.3.1 Solyc01g073890 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc02g068680.1.1 Solyc02g068680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g21651 AtAIRP1, AIRP1 E3 ubiquitin ligase *(AIRP1) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 310 353
IPR004146 DC1 3 46
IPR004146 DC1 110 163
IPR004146 DC1 172 219
No external refs found!