Aliases : ATML1
Description : HD-ZIP IV-type transcription factor & original description: none
Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g14038 | |
| Cluster | HCCA: Cluster_88 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G05230 | HDG2 | homeodomain GLABROUS 2 | 0.04 | OrthoFinder output from all 47 species | |
| AT5G46880 | HDG5, HB-7 | homeobox-7 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G070600.1 | PDF2, Ceric.12G070600 | HD-ZIP IV-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.29G064400.1 | ATML1, Ceric.29G064400 | HD-ZIP IV-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g05023 | PDF2 | HD-ZIP IV-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os04g53540.3 | PDF2, LOC_Os04g53540 | transcription factor (HD-ZIP IV) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os08g08820.2 | PDF2, LOC_Os08g08820 | transcription factor (HD-ZIP IV) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g35760.1 | HDG1, HD-GL2-1,... | transcription factor (HD-ZIP IV) | 0.02 | OrthoFinder output from all 47 species | |
| MA_483958g0010 | ATML1 | transcription factor (HD-ZIP IV) | 0.03 | OrthoFinder output from all 47 species | |
| MA_8859629g0010 | PDF2 | transcription factor (HD-ZIP IV) | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g31372 | PDF2 | HD-ZIP IV-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008289 | lipid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| No external refs found! |
