Description : component *(uL3c) of large plastid ribosomal-subunit proteome & original description: none
Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g14058 | |
| Cluster | HCCA: Cluster_262 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01019355001 | No alias | 50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea | 0.02 | OrthoFinder output from all 47 species | |
| Gb_26251 | No alias | component psRPL3 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g04460.1 | LOC_Os02g04460 | component psRPL3 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| Len_g00379 | No alias | component *(uL3c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g03320.1 | No alias | component psRPL3 of large ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g11263 | No alias | component *(uL3c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g17202 | No alias | component *(uL3c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c6_28830V3.1 | Pp3c6_28830 | Ribosomal protein L3 family protein | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g24523 | No alias | component *(uL3c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g051200.3.1 | Solyc06g051200 | component psRPL3 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g05012 | No alias | component *(uL3c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004655 | porphobilinogen synthase activity | IEP | HCCA |
| CC | GO:0005875 | microtubule associated complex | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| CC | GO:0030286 | dynein complex | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000597 | Ribosomal_L3 | 171 | 258 |
| No external refs found! |
